Publications:
A selected list of publications:
Qi Hangfei, Chu Virginia, Wu Nicholas C, Chen Zugen, Truong Shawna, Brar Gurpreet, Su Sheng-Yao, Du Yushen, Arumugaswami Vaithilingaraja, Olson C Anders, Chen Shu-Hua, Lin Chung-Yen, Wu Ting-Ting, Sun Ren
Systematic identification of anti-interferon function on hepatitis C
virus genome reveals p7 as an immune evasion protein
Proceedings of the National Academy of Sciences of the United States of America,
2017; 114(8):
2018-2023.
Gong Danyang, Kim Yong Hoon, Xiao Yuchen, Du Yushen, Xie Yafang, Lee Kevin K, Feng Jun, Farhat Nisar, Zhao Dawei, Shu Sara, Dai Xinghong, Chanda Sumit K, Rana Tariq M, Krogan Nevan J, Sun Ren, Wu Ting-Ting
A Herpesvirus Protein Selectively Inhibits Cellular mRNA Nuclear
Export
Cell host & microbe,
2016; 20(5):
642-653.
Wu Nicholas C, Du Yushen, Le Shuai, Young Arthur P, Zhang Tian-Hao, Wang Yuanyuan, Zhou Jian, Yoshizawa Janice M, Dong Ling, Li Xinmin, Wu Ting-Ting, Sun Ren
Coupling high-throughput genetics with phylogenetic information
reveals an epistatic interaction on the influenza A virus M segment
BMC genomics,
2016; 17(2):
46.
Feng Jiaying, Gong Danyang, Fu Xudong, Wu Ting-ting, Wang Jane, Chang Jennifer, Zhou Jingting, Lu Gang, Wang Yibin, Sun Ren
M1 of Murine Gamma-Herpesvirus 68 Induces Endoplasmic Reticulum
Chaperone Production
Scientific reports,
2015; 5(7):
17228.
Wu Nicholas C, Olson C Anders, Du Yushen, Le Shuai, Tran Kevin, Remenyi Roland, Gong Danyang, Al-Mawsawi Laith Q, Qi Hangfei, Wu Ting-Ting, Sun Ren
Functional Constraint Profiling of a Viral Protein Reveals Discordance
of Evolutionary Conservation and Functionality
PLoS genetics,
2015; 11(7):
e1005310.
Gong Danyang, Wu Nicholas C, Xie Yafang, Feng Jun, Tong Leming, Brulois Kevin F, Luan Harding, Du Yushen, Jung Jae U, Wang Cun-yu, Kang Mo Kwan, Park No-Hee, Sun Ren, Wu Ting-Ting
Kaposi's sarcoma-associated herpesvirus ORF18 and ORF30 are essential
for late gene expression during lytic replication
Journal of virology,
2014; 88(19):
11369-82.
Remenyi Roland, Qi Hangfei, Su Sheng-Yao, Chen Zugen, Wu Nicholas C, Arumugaswami Vaithilingaraja, Truong Shawna, Chu Virginia, Stokelman Tamar, Lo Hung-Hao, Olson C Anders, Wu Ting-Ting, Chen Shu-Hwa, Lin Chung-Yen, Sun Ren
A comprehensive functional map of the hepatitis C virus genome
provides a resource for probing viral proteins
mBio,
2014; 5(5):
e01469-14.
Feng Jun, De Jesus Paul D, Su Victoria, Han Stephanie, Gong Danyang, Wu Nicholas C, Tian Yuan, Li Xudong, Wu Ting-Ting, Chanda Sumit K, Sun Ren
RIOK3 Is an Adaptor Protein Required for IRF3-Mediated Antiviral Type
I Interferon Production
Journal of virology,
2014; 88(14):
7987-97.
Wu Nicholas C, Young Arthur P, Al-Mawsawi Laith Q, Olson C Anders, Feng Jun, Qi Hangfei, Luan Harding H, Li Xinmin, Wu Ting-Ting, Sun Ren
High-throughput identification of loss-of-function mutations for
anti-interferon activity in influenza A virus NS segment
Journal of virology,
2014; 88(14):
.
Wu Nicholas C, Young Arthur P, Al-Mawsawi Laith Q, Olson C Anders, Feng Jun, Qi Hangfei, Chen Shu-Hwa, Lu I-Hsuan, Lin Chung-Yen, Chin Robert G, Luan Harding H, Nguyen Nguyen, Nelson Stanley F, Li Xinmin, Wu Ting-Ting, Sun Ren
High-throughput profiling of influenza A virus hemagglutinin gene at
single-nucleotide resolution
Scientific reports,
2014; 4:
4942.
Qi Hangfei, Olson C Anders, Wu Nicholas C, Ke Ruian, Loverdo Claude, Chu Virginia, Truong Shawna, Remenyi Roland, Chen Zugen, Du Yushen, Su Sheng-Yao, Al-Mawsawi Laith Q, Wu Ting-Ting, Chen Shu-Hua, Lin Chung-Yen, Zhong Weidong, Lloyd-Smith James O, Sun Ren
A quantitative high-resolution genetic profile rapidly identifies
sequence determinants of hepatitis C viral fitness and drug
sensitivity
PLoS pathogens,
2014; 10(4):
e1004064.
Wu Nicholas C, De La Cruz Justin, Al-Mawsawi Laith Q, Olson C Anders, Qi Hangfei, Luan Harding H, Nguyen Nguyen, Du Yushen, Le Shuai, Wu Ting-Ting, Li Xinmin, Lewis Martha J, Yang Otto O, Sun Ren
HIV-1 quasispecies delineation by tag linkage deep sequencing
PloS one,
2014; 9(5):
e97505.
Wong-Ho Elaine, Wu Ting-Ting, Davis Zoe H, Zhang Bingqing, Huang Jian, Gong Hao, Deng Hongyu, Liu Fenyong, Glaunsinger Britt, Sun Ren
Unconventional sequence requirement for viral late gene core promoters
of murine gammaherpesvirus 68
Journal of virology,
2014; 88(6):
3411-22.
Dolan Patrick T, Zhang Chaoying, Khadka Sudip, Arumugaswami Vaithilingaraja, Vangeloff Abbey D, Heaton Nicholas S, Sahasrabudhe Sudhir, Randall Glenn, Sun Ren, LaCount Douglas J
Identification and comparative analysis of hepatitis C virus-host cell
protein interactions
Molecular bioSystems,
2013; 9(12):
3199-209.
Wei Qingshan, Qi Hangfei, Luo Wei, Tseng Derek, Ki So Jung, Wan Zhe, Göröcs Zoltán, Bentolila Laurent A, Wu Ting-Ting, Sun Ren, Ozcan Aydogan
Fluorescent imaging of single nanoparticles and viruses on a smart
phone
ACS nano,
2013; 7(10):
9147-55.
Olson C Anders, Nie Jeff, Diep Jonathan, Al-Shyoukh Ibrahim, Takahashi Terry T, Al-Mawsawi Laith Q, Bolin Jennifer M, Elwell Angela L, Swanson Scott, Stewart Ron, Thomson James A, Soh H Tom, Roberts Richard W, Sun Ren
Single-round, multiplexed antibody mimetic design through mRNA
display
Angewandte Chemie (International ed. in English),
2012; 51(50):
12449-53.
Noh Cheol-Woo, Cho Hye-Jeong, Kang Hye-Ri, Jin Hyun Yong, Lee Shaoying, Deng Hongyu, Wu Ting-Ting, Arumugaswami Vaithilingaraja, Sun Ren, Song Moon Jung
The Virion-Associated Open Reading Frame 49 of Murine Gammaherpesvirus
68 Promotes Viral Replication both In Vitro and In Vivo as a
Derepressor of RTA
Journal of virology,
2012; 86(2):
1109-18.
Tyynismaa Henna, Sun Ren, Ahola-Erkkilä Sofia, Almusa Henrikki, Pöyhönen Rosanna, Korpela Mari, Honkaniemi Jari, Isohanni Pirjo, Paetau Anders, Wang Liya, Suomalainen Anu
Thymidine kinase 2 mutations in autosomal recessive progressive
external ophthalmoplegia with multiple mitochondrial DNA deletions
Human molecular genetics,
2012; 21(1):
66-75.
Lee Shaoying, Salwinski Lukasz, Zhang Chaoying, Chu Derrick, Sampankanpanich Claire, Reyes Nichole A, Vangeloff Abbey, Xing Fangfang, Li Xudong, Wu Ting-Ting, Sahasrabudhe Sudhir, Deng Hongyu, Lacount Douglas J, Sun Ren
An integrated approach to elucidate the intra-viral and viral-cellular
protein interaction networks of a gamma-herpesvirus
PLoS pathogens,
2011; 7(10):
e1002297.
Liu Yanan, Tian Xiaoli, Leitner Wolfgang W, Aldridge Michael E, Zheng Junying, Yu Zhiya, Restifo Nicholas P, Weiss Richard, Scheiblhofer Sandra, Xie Chong, Sun Ren, Cheng Genhong, Zeng Gang
Polymeric structure and host Toll-like receptor 4 dictate
immunogenicity of NY-ESO-1 antigen in vivo
The Journal of biological chemistry,
2011; 286(43):
37077-84.
Jia Qingmei, Freeman Michael L, Yager Eric J, McHardy Ian, Tong Leming, Martinez-Guzman DeeAnn, Rickabaugh Tammy, Hwang Seungmin, Blackman Marcia A, Sun Ren, Wu Ting-Ting
Induction of protective immunity against murine gammaherpesvirus 68
infection in the absence of viral latency
Journal of virology,
2010; 84(5):
2453-65.
Freeman Michael L, Lanzer Kathleen G, Cookenham Tres, Peters Bjoern, Sidney John, Wu Ting-Ting, Sun Ren, Woodland David L, Sette Alessandro, Blackman Marcia A
Two kinetic patterns of epitope-specific CD8 T-cell responses
following murine gammaherpesvirus 68 infection
Journal of virology,
2010; 84(6):
2881-92.
Peng Li, Wu Ting-Ting, Tchieu Jason H, Feng Jun, Brown Helen J, Feng Jiaying, Li Xudong, Qi Jing, Deng Hongyu, Vivanco Igor, Mellinghoff Ingo K, Jamieson Christina, Sun Ren
Inhibition of the phosphatidylinositol 3-kinase-Akt pathway enhances
gamma-2 herpesvirus lytic replication and facilitates reactivation
from latency
The Journal of general virology,
2010; 91(Pt 2):
463-9.
Gonzalez Oscar, Fontanes Vanessa, Raychaudhuri Santanu, Loo Rachel, Loo Joseph, Arumugaswami Vaithilingaraja, Sun Ren, Dasgupta Asim, French Samuel W
The heat shock protein inhibitor Quercetin attenuates hepatitis C
virus production
Hepatology (Baltimore, Md.),
2009; 50(6):
1756-64.
E Xiaofei, Hwang Seungmin, Oh Soohwan, Lee Jong-Soo, Jeong Joseph H, Gwack Yousang, Kowalik Timothy F, Sun Ren, Jung Jae U, Liang Chengyu
Viral Bcl-2-mediated evasion of autophagy aids chronic infection of
gammaherpesvirus 68
PLoS pathogens,
2009; 5(10):
e1000609.
Ishikawa Fumiaki N, Chang Hsiao-Kang, Curreli Marco, Liao Hsiang-I, Olson C Anders, Chen Po-Chiang, Zhang Rui, Roberts Richard W, Sun Ren, Cote Richard J, Thompson Mark E, Zhou Chongwu
Label-free, electrical detection of the SARS virus N-protein with
nanowire biosensors utilizing antibody mimics as capture probes
ACS nano,
2009; 3(5):
1219-24.
Hwang Seungmin, Kim Kyeong Seon, Flano Emilio, Wu Ting-Ting, Tong Leming M, Park Ann N, Song Moon Jung, Sanchez David Jesse, O'Connell Ryan M, Cheng Genhong, Sun Ren
Conserved herpesviral kinase promotes viral persistence by inhibiting the IRF-3-mediated type I interferon response
Cell host & microbe,
2009; 5(2):
166-78.
Arumugaswami Vaithilingaraja, Sitapara Ronika, Hwang Seungmin, Song Moon Jung, Ho Tuyet Ngoc, Su Nancy Qi, Sue Eric Y, Kanagavel Vidhya, Xing Fangfang, Zhang Xiaolin, Zhao Minglei, Deng Hongyu, Wu Ting-Ting, Kanagavel Sudhakar, Zhang LuLu, Dandekar Sugandha, Papp Jeanette, Sun Ren
High-resolution functional profiling of a gammaherpesvirus RTA locus in the context of the viral genome
Journal of virology,
2009; 83(4):
1811-22.
Song Changyong, Jiang Huaidong, Mancuso Adrian, Amirbekian Bagrat, Peng Li, Sun Ren, Shah Sanket S, Zhou Z Hong, Ishikawa Tetsuya, Miao Jianwei
Quantitative imaging of single, unstained viruses with coherent x rays
Physical review letters,
2008; 101(15):
158101.
Yu Lei, Zhang Baohua, Szilvay Géza R, Sun Ren, Jänis Janne, Wang Zefang, Feng Shuren, Xu Haijin, Linder Markus B, Qiao Mingqiang
Protein HGFI from the edible mushroom Grifola frondosa is a novel 8
kDa class I hydrophobin that forms rodlets in compressed monolayers
Microbiology (Reading, England),
2008; 154(Pt 6):
1677-85.
Sanchez David Jesse, Miranda Daniel, Arumugaswami Vaithilingaraja, Hwang Seungmin, Singer Adam E, Senaati Ashkon, Shahangian Arash, Song Moon Jung, Sun Ren, Cheng Genhong
A repetitive region of gammaherpesvirus genomic DNA is a ligand for induction of type I interferon
Journal of virology,
2008; 82(5):
2208-17.
Dai Wei, Jia Qingmei, Bortz Eric, Shah Sanket, Liu Jun, Atanasov Ivo, Li Xudong, Taylor Kenneth A, Sun Ren, Zhou Z Hong
Unique structures in a tumor herpesvirus revealed by cryo-electron tomography and microscopy
Journal of structural biology,
2008; 161(3):
428-38.
Feng Pinghui, Liang Chengyu, Shin Young C, Xiaofei E, Zhang Weijun, Gravel Robyn, Wu Ting-ting, Sun Ren, Usherwood Edward, Jung Jae U
A novel inhibitory mechanism of mitochondrion-dependent apoptosis by a herpesviral protein
PLoS pathogens,
2007; 3(12):
e174.
Benach Jordi, Wang Lili, Chen Yang, Ho Chi Kent, Lee Shaoying, Seetharaman Jayaraman, Xiao Rong, Acton Thomas B, Montelione Gaetano T, Deng Hongyu, Sun Ren, Tong Liang
Structural and functional studies of the abundant tegument protein ORF52 from murine gammaherpesvirus 68
The Journal of biological chemistry,
2007; 282(43):
31534-41.
Tarakanova Vera L, Leung-Pineda Van, Hwang Seungmin, Yang Chiao-Wen, Matatall Katie, Basson Mickael, Sun Ren, Piwnica-Worms Helen, Sleckman Barry P, Virgin Herbert W
Gamma-herpesvirus kinase actively initiates a DNA damage response by inducing phosphorylation of H2AX to foster viral replication
Cell host & microbe,
2007; 1(4):
275-86.
Yu Fuqu, Harada Josephine N, Brown Helen J, Deng Hongyu, Song Moon Jung, Wu Ting-Ting, Kato-Stankiewicz Juran, Nelson Christian G, Vieira Jeffrey, Tamanoi Fuyuhiko, Chanda Sumit K, Sun Ren
Systematic identification of cellular signals reactivating Kaposi sarcoma-associated herpesvirus
PLoS pathogens,
2007; 3(3):
e44.
Chang Margaret, Brown Helen J, Collado-Hidalgo Alicia, Arevalo Jesusa M, Galic Zoran, Symensma Tonia L, Tanaka Lena, Deng Hongyu, Zack Jerome A, Sun Ren, Cole Steve W
beta-Adrenoreceptors reactivate Kaposi's sarcoma-associated herpesvirus lytic replication via PKA-dependent control of viral RTA
Journal of virology,
2005; 79(21):
13538-47.
Chang M, Brown HJ, Collado-Hidalgo A, Arevalo JM, Galic Z, Symensma TL, Tanaka L, Deng H, Zack JA, Sun R, Cole SW
Beta-Adrenoreceptors reactivate Kaposi's sarcoma-associated herpesvirus lytic replication via PKA-dependent control of viral RTA
J Virol,
2005; 79(21):
13538-47.
Song Moon Jung, Hwang Seungmin, Wong Wendy, Round June, Martinez-Guzman Deeann, Turpaz Yaron, Liang Jie, Wong Ben, Johnson Reid C, Carey Michael, Sun Ren
The DNA architectural protein HMGB1 facilitates RTA-mediated viral gene expression in gamma-2 herpesviruses
Journal of virology,
2004; 78(23):
12940-50.
Wu Shui-ping, Zuo Qian, Lan Tian, Deng Hui-wen, Li Ben-gang, Xu Fu-liu, Shen Wei-ran, Qin Bao-ping, Sun Ren, Tao Shu
[PAHs in airborne particles from Tianjin in winter season]
Huan jing ke xue= Huanjing kexue / [bian ji, Zhongguo ke xue yuan huan jing ke xue wei yuan hui "Huan jing ke xue" bian ji wei yuan hui.],
2004; 25(4):
13-7.
Doyle Sean, Vaidya Sagar, O'Connell Ryan, Dadgostar Hajir, Dempsey Paul, Wu Ting, Rao Govinda, Sun Ren, Haberland Margaret, Modlin Robert, Cheng Genhong
IRF3 mediates a TLR3/TLR4-specific antiviral gene program
Immunity,
2002; 17(3):
251-63.