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Larry Simpson, Ph.D.

Contact Information:

Work Phone Number:

310-825-4215
310-825-7708

Work Address:

Office
MRL
Los Angeles, CA 90095
UNITED STATES
6-780 MRL
CAMPUS - 166222
CA
UNITED STATES
Laboratory
MRL
Los Angeles, CA 90095
UNITED STATES

Email Address:

simpson@kdna.ucla.edu

Personal Email Address:

larrys3255@gmail.com

Website:

Home Page.

Professor, Microbiology, Immunology & Molecular Genetics

Member, ACCESS Program: Dept. of Microbiology, Immunology, & Molecular Genetics

JCCC Cancer and Stem Cell Biology Program Area


Detailed Biography:

Molecular biology of parasitic protozoa I am interested in the molecular biology of parasitic protozoa known as trypanosomes or kinetoplastid protozoa. In particular, we are investigating a novel type of RNA modification phenomenon termed ?RNA editing?, that occurs in the single mitochondrion. mRNA transcripts of the mitochondrial maxicircle DNA molecules are modified after transcription by the insertion and deletion of uridine residues at precise sites within coding regions to form a translatable sequence. The information for this editing is contained in small ?guide RNAs?, which hybridize to the pre-edited mRNA and somehow mediate the transfer of uridines to the editing sites. The guide RNAs are encoded mainly in the thousands of minicircular molecules linked by catenation in the single giant network of DNA present in the single mitochondrion of these cells. In some cases multiple overlapping gRNAs mediate the addition of hundreds of uridines at hundreds of sites. We are studying the mechanism of this unusual process by establishing an in vitro editing system. Several classes of ribonucleoprotein complexes appear to be involved, and these are being dissected and analyzed. Proteins involved in the editing process are being isolated and the genes cloned. In addition, we are interested in the evolution of RNA editing in these ancient lower eukaryotic cells. To this end we are analyzing editing in a variety of kinetoplastid protozoa, whose phylogenetic relationships we have determined. By a comparative analysis we can make some deductions about the evolution of this phenomenon. We are also studying the changes in the editing system that occur during prolonged culture of trypanosomes, which appear to involve the loss of minicircle sequence classes encoding specific guide RNA families. I am also interested in other aspects of the mitochondrial genetic system and mitochondrial biogenesis. Since there are no transfer RNAs encoded in the mitochondrial genome of trypanosomes, all the mt tRNAs must be imported, and the mechanism of this process is being actively studied in my laboratory. Mitochondrial transcription and translation are other processes in which I have a great interest.

Publications:

  URL for all publications http://dna.kdna.ucla.edu/simpsonlab/mybib.html, ; .
Carillo, R., Thiemann, O.H., Alfonzo, J.D., Simpson, L.   Uridine insertion/deletion RNA editing in Leishmania tarentolae mitochondria shows cell cycle dependence., Mol. Biochem. Parasitol., 2001; 113 : 175-181 .
Alfonzo, J.D., Blanc, V., Estevez, A.M., Rubio, M.A.T., Simpson, L.   C to U editing of anticodon of imported mitochondrial tRNATrp allows decoding of UGA stop codon in Leishmania., EMBO J., 1999; 18: 7056-7062.
Estevez, A.M., Kierzenbaum, F., Wirtz, E., Bringaud, F., Grunstein, J., Simpson, L.   Knockoutof the glutamate dehydrogenase gene in bloodstream Trypanosoma brucei in culture has no effect on editing of mitochondrial mRNAs., Mol. Biochem. Parasitol., 1999; 100: 5-17.
Estevez,A.E., Thiemann, O.H., Alfonzo, J.D., Simpson, L.   T7 RNA polymerase driven transcription in mitochondria of Leishmania tarentolae and Trypanosoma brucei., Mol. Biochem. Parasitol., 1999; 103: 251-259.
Blanc, V., Alfonzo, J.D., Aphasizhev, R., Simpson, L.   The mitochondrial RNA ligase from Leishmania tarentolae can join RNA molecules bridged by a complementary RNA., J. Biol. Chem. , 1999; 274: 24289-24296.
Estevez, A.M., Simpson, L.   Uridine insertion/deletion RNA editing in trypanosome mitochondria - a review., Gene, 1999; 240: 247-260.
Aphasizhev, R Simpson, L   Isolation and characterization of a U-specific 3'-5'-exonuclease from mitochondria of Leishmania tarentolae. The Journal of biological chemistry. , 2001; 276(24): 21280-4.
Kapushoc, ST Alfonzo, JD Rubio, MA Simpson, L   End processing precedes mitochondrial importation and editing of tRNAs in Leishmania tarentolae. The Journal of biological chemistry. , 2000; 275(48): 37907-14.
Rubio, MA Liu, X Yuzawa, H Alfonzo, JD Simpson, L   Selective importation of RNA into isolated mitochondria from Leishmania tarentolae. RNA (New York, N.Y.) , 2000; 6(7): 988-1003.
Simpson, L Thiemann, OH Savill, NJ Alfonzo, JD Maslov, DA   Evolution of RNA editing in trypanosome mitochondria. Proceedings of the National Academy of Sciences of the United States of America. , 2000; 97(13): 6986-93.
Kapushoc, ST Simpson, L   In vitro uridine insertion RNA editing mediated by cis-acting guide RNAs. RNA (New York, N.Y.) , 1999; 5(5): 656-69.
Alfonzo, JD Thiemann, OH Simpson, L   Purification and characterization of MAR1. A mitochondrial associated ribonuclease from Leishmania tarentolae. The Journal of biological chemistry. , 1998; 273(45): 30003-11.
Alfonzo, JD Thiemann, O Simpson, L   The mechanism of U insertion/deletion RNA editing in kinetoplastid mitochondria. Nucleic acids research. , 1997; 25(19): 3751-9.
Byrne, EM Connell, GJ Simpson, L   Guide RNA-directed uridine insertion RNA editing in vitro. The EMBO journal. , 1996; 15(23): 6758-65.
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