Todd O Yeates

Title(s)Recalled Professor, Chemistry and Biochemistry
SchoolCollege of Letters and Science
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    Other Positions
    Title(s)Professor Emeritus, Chemistry and Biochemistry


    Collapse Research 
    Collapse Research Activities and Funding
    Designing Novel Protein Assemblies as Rigid Symmetric Scaffolds for Cryo-EM Imaging
    NIH R01GM129854Apr 1, 2019 - Mar 31, 2023
    Role: Principal Investigator
    Stopped-Flow Spectrometer
    NIH S10OD023584Mar 15, 2017 - Mar 14, 2018
    Role: Principal Investigator
    Mapping the Evolution of a Novel Enzyme by Experiment and Computation
    NIH R01GM097200Apr 1, 2012 - Feb 28, 2017
    Role: Co-Principal Investigator
    HTC Imaging Plate Detector and Crystal Cryo-Cooling System
    NIH S10RR026571Jul 8, 2010 - Jul 7, 2011
    Role: Principal Investigator
    Dissecting the structure, function, and mechanisms of diverse protein-based metabolic organelles in bacteria
    NIH R01AI081146Jul 17, 2009 - Apr 30, 2022
    Role: Co-Principal Investigator
    Elucidating Novel Topological Features in Protein Structures
    NIH R01GM081652Sep 1, 2007 - Aug 31, 2012
    Role: Principal Investigator
    Molecular Basis of Biological Recognition and Assembly
    NIH P01GM031299Apr 1, 1983 - Apr 30, 2007
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Making topological protein links using enzymatic reactions. Natl Sci Rev. 2024 Mar; 11(3):nwae071. Castells-Graells R, Yeates TO. PMID: 38572076; PMCID: PMC10990160.
      View in: PubMed   Mentions:
    2. AlphaFold-assisted structure determination of a bacterial protein of unknown function using X-ray and electron crystallography. Acta Crystallogr D Struct Biol. 2024 Apr 01. Miller JE, Agdanowski MP, Dolinsky JL, Sawaya MR, Cascio D, Rodriguez JA, Yeates TO. PMID: 38451205.
      View in: PubMed   Mentions:
    3. Design of a symmetry-broken tetrahedral protein cage by a method of internal steric occlusion. Protein Sci. 2024 Apr; 33(4):e4973. Gladkov N, Scott EA, Meador K, Lee EJ, Laganowsky AD, Yeates TO, Castells-Graells R. PMID: 38533546; PMCID: PMC10966355.
      View in: PubMed   Mentions: 1     Fields:    
    4. A suite of designed protein cages using machine learning and protein fragment-based protocols. Structure. 2024 Mar 19. Meador K, Castells-Graells R, Aguirre R, Sawaya MR, Arbing MA, Sherman T, Senarathne C, Yeates TO. PMID: 38513658.
      View in: PubMed   Mentions: 1     Fields:    
    5. Designed fluorescent protein cages as fiducial markers for targeted cell imaging. bioRxiv. 2024 Mar 01. Gee M, Atai K, Coller HA, Yeates TO, Castells-Graells R. PMID: 38464160; PMCID: PMC10925312.
      View in: PubMed   Mentions:
    6. Design and Construction of a Designed Ankyrin Repeat Protein (DARPin) Display Library. Curr Protoc. 2024 Jan; 4(1):e960. Morselli M, Holton TR, Pellegrini M, Yeates TO, Arbing MA. PMID: 38206591.
      View in: PubMed   Mentions:    Fields:    
    7. Design of Ligand-Operable Protein-Cages That Open Upon Specific Protein Binding. ACS Synth Biol. 2024 Jan 19; 13(1):157-167. Lee EJ, Gladkov N, Miller JE, Yeates TO. PMID: 38133598.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    8. Design of a symmetry-broken tetrahedral protein cage by a method of internal steric occlusion. bioRxiv. 2023 Nov 09. Gladkov N, Scott EA, Meador K, Lee EJ, Laganowsky AD, Yeates TO, Castells-Graells R. PMID: 37986890; PMCID: PMC10659388.
      View in: PubMed   Mentions:
    9. A single shell protein plays a major role in choline transport across the shell of the choline utilization microcompartment of Escherichia coli 536. Microbiology (Reading). 2023 Nov; 169(11). Ochoa JM, Dershwitz P, Schappert M, Sinha S, Herring TI, Yeates TO, Bobik TA. PMID: 37971493; PMCID: PMC10710832.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    10. A Suite of Designed Protein Cages Using Machine Learning Algorithms and Protein Fragment-Based Protocols. bioRxiv. 2023 Oct 09. Meador K, Castells-Graells R, Aguirre R, Sawaya MR, Arbing MA, Sherman T, Senarathne C, Yeates TO. PMID: 37873110; PMCID: PMC10592684.
      View in: PubMed   Mentions:
    11. Cryo-EM structure determination of small therapeutic protein targets at 3 Å-resolution using a rigid imaging scaffold. Proc Natl Acad Sci U S A. 2023 09 12; 120(37):e2305494120. Castells-Graells R, Meador K, Arbing MA, Sawaya MR, Gee M, Cascio D, Gleave E, Debreczeni JÉ, Breed J, Leopold K, Patel A, Jahagirdar D, Lyons B, Subramaniam S, Phillips C, Yeates TO. PMID: 37669364; PMCID: PMC10500258.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    12. Design of Beta-2 Microglobulin Adsorbent Protein Nanoparticles. Biomolecules. 2023 07 14; 13(7). Miller JE, Castells-Graells R, Arbing MA, Munoz A, Jiang YX, Espinoza CT, Nguyen B, Moroz P, Yeates TO. PMID: 37509158; PMCID: PMC10377675.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    13. Crystal structure of MbnF: an NADPH-dependent flavin monooxygenase from Methylocystis strain SB2. Acta Crystallogr F Struct Biol Commun. 2023 May 01; 79(Pt 5):111-118. Stewart A, Dershwitz P, Stewart C, Sawaya MR, Yeates TO, Semrau JD, Zischka H, DiSpirito AA, Bobik TA. PMID: 37158309; PMCID: PMC10167746.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    14. AlphaFold predicts the most complex protein knot and composite protein knots. Protein Sci. 2022 08; 31(8):e4380. Brems MA, Runkel R, Yeates TO, Virnau P. PMID: 35900026; PMCID: PMC9278004.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    15. Designing Protease-Triggered Protein Cages. J Am Chem Soc. 2022 07 20; 144(28):12681-12689. Miller JE, Srinivasan Y, Dharmaraj NP, Liu A, Nguyen PL, Taylor SD, Yeates TO. PMID: 35802879.
      View in: PubMed   Mentions: 3     Fields:    
    16. Structural characterization of hexameric shell proteins from two types of choline-utilization bacterial microcompartments. Acta Crystallogr F Struct Biol Commun. 2021 Sep 01; 77(Pt 9):275-285. Ochoa JM, Mijares O, Acosta AA, Escoto X, Leon-Rivera N, Marshall JD, Sawaya MR, Yeates TO. PMID: 34473104; PMCID: PMC8411931.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    17. Recent structural insights into bacterial microcompartment shells. Curr Opin Microbiol. 2021 08; 62:51-60. Ochoa JM, Yeates TO. PMID: 34058518; PMCID: PMC9014851.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    18. MCPdb: The bacterial microcompartment database. PLoS One. 2021; 16(3):e0248269. Ochoa JM, Bair K, Holton T, Bobik TA, Yeates TO. PMID: 33780471; PMCID: PMC8007038.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    19. Geometric Lessons and Design Strategies for Nanoscale Protein Cages. ACS Nano. 2021 03 23; 15(3):4277-4286. Laniado J, Cannon KA, Miller JE, Sawaya MR, McNamara DE, Yeates TO. PMID: 33683103.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    20. The coronavirus disease 2019 (COVID-19) stay-at-home order's unequal effects on trauma volume by insurance status in Southern California. Surgery. 2021 09; 170(3):962-968. Yeates EO, Juillard C, Grigorian A, Schellenberg M, Owattanapanich N, Barmparas G, Margulies D, Garber K, Cryer H, Tillou A, Burruss S, Penaloza-Villalobos L, Lin A, Figueras RA, Brenner M, Firek C, Costantini T, Santorelli J, Curry T, Wintz D, Biffl WL, Schaffer KB, Duncan TK, Barbaro C, Diaz G, Johnson A, Chinn J, Naaseh A, Leung A, Grabar C, Yeates TO, Nahmias J. PMID: 33849732.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansPHPublic Health
    21. A fragment-based protein interface design algorithm for symmetric assemblies. Protein Eng Des Sel. 2021 02 15; 34. Laniado J, Meador K, Yeates TO. PMID: 33955480; PMCID: PMC8101011.
      View in: PubMed   Mentions: 3     Fields:    
    22. Advances in the World of Bacterial Microcompartments. Trends Biochem Sci. 2021 05; 46(5):406-416. Stewart AM, Stewart KL, Yeates TO, Bobik TA. PMID: 33446424; PMCID: PMC8052279.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    23. Computational design of mixed chirality peptide macrocycles with internal symmetry. Protein Sci. 2020 12; 29(12):2433-2445. Mulligan VK, Kang CS, Sawaya MR, Rettie S, Li X, Antselovich I, Craven TW, Watkins AM, Labonte JW, DiMaio F, Yeates TO, Baker D. PMID: 33058266; PMCID: PMC7679966.
      View in: PubMed   Mentions: 9     Fields:    
    24. A complete rule set for designing symmetry combination materials from protein molecules. Proc Natl Acad Sci U S A. 2020 12 15; 117(50):31817-31823. Laniado J, Yeates TO. PMID: 33239442; PMCID: PMC7749312.
      View in: PubMed   Mentions: 11     Fields:    
    25. Symmetry breaking and structural polymorphism in a bacterial microcompartment shell protein for choline utilization. Protein Sci. 2020 11; 29(11):2201-2212. Ochoa JM, Nguyen VN, Nie M, Sawaya MR, Bobik TA, Yeates TO. PMID: 32885887; PMCID: PMC7586910.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    26. Advances in methods for atomic resolution macromolecular structure determination. F1000Res. 2020; 9. Thompson MC, Yeates TO, Rodriguez JA. PMID: 32676184; PMCID: PMC7333361.
      View in: PubMed   Mentions: 9     Fields:    Translation:Cells
    27. Design and Characterization of an Icosahedral Protein Cage Formed by a Double-Fusion Protein Containing Three Distinct Symmetry Elements. ACS Synth Biol. 2020 03 20; 9(3):517-524. Cannon KA, Nguyen VN, Morgan C, Yeates TO. PMID: 32050070.
      View in: PubMed   Mentions: 17     Fields:    
    28. Development of imaging scaffolds for cryo-electron microscopy. Curr Opin Struct Biol. 2020 02; 60:142-149. Yeates TO, Agdanowski MP, Liu Y. PMID: 32066085; PMCID: PMC7117969.
      View in: PubMed   Mentions: 10     Fields:    
    29. Editorial overview: Engineered proteins as tools in structural biology. Curr Opin Struct Biol. 2020 02; 60:v-vi. Steyaert J, Yeates TO. PMID: 32228884.
      View in: PubMed   Mentions:    Fields:    
    30. Designed Protein Cages as Scaffolds for Building Multienzyme Materials. ACS Synth Biol. 2020 02 21; 9(2):381-391. McConnell SA, Cannon KA, Morgan C, McAllister R, Amer BR, Clubb RT, Yeates TO. PMID: 31922719.
      View in: PubMed   Mentions: 17     Fields:    
    31. Design and structure of two new protein cages illustrate successes and ongoing challenges in protein engineering. Protein Sci. 2020 04; 29(4):919-929. Cannon KA, Park RU, Boyken SE, Nattermann U, Yi S, Baker D, King NP, Yeates TO. PMID: 31840320; PMCID: PMC7096701.
      View in: PubMed   Mentions: 21     Fields:    Translation:Cells
    32. The structure of bovine β-lactoglobulin in crystals grown at pH 3.8 exhibiting novel threefold twinning. Acta Crystallogr F Struct Biol Commun. 2019 Oct 01; 75(Pt 10):640-645. Yeates TO, McPherson A. PMID: 31584012; PMCID: PMC6777136.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    33. Protein assembles into Archimedean geometry. Nature. 2019 05; 569(7756):340-342. Yeates TO. PMID: 31076733.
      View in: PubMed   Mentions:    Fields:    
    34. A 3.8 Å resolution cryo-EM structure of a small protein bound to an imaging scaffold. Nat Commun. 2019 04 23; 10(1):1864. Liu Y, Huynh DT, Yeates TO. PMID: 31015551; PMCID: PMC6478846.
      View in: PubMed   Mentions: 38     Fields:    Translation:Cells
    35. High-symmetry protein assemblies: patterns and emerging applications. Curr Opin Struct Biol. 2019 04; 55:77-84. Cannon KA, Ochoa JM, Yeates TO. PMID: 31005680.
      View in: PubMed   Mentions: 18     Fields:    
    36. Microfocus diffraction from different regions of a protein crystal: structural variations and unit-cell polymorphism. Acta Crystallogr D Struct Biol. 2018 05 01; 74(Pt 5):411-421. Thompson MC, Cascio D, Yeates TO. PMID: 29717712; PMCID: PMC5930349.
      View in: PubMed   Mentions: 6  Translation:Cells
    37. RAF2 is a RuBisCO assembly factor in Arabidopsis thaliana. Plant J. 2018 04; 94(1):146-156. Fristedt R, Hu C, Wheatley N, Roy LM, Wachter RM, Savage L, Harbinson J, Kramer DM, Merchant SS, Yeates T, Croce R. PMID: 29396988.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    38. Near-atomic cryo-EM imaging of a small protein displayed on a designed scaffolding system. Proc Natl Acad Sci U S A. 2018 03 27; 115(13):3362-3367. Liu Y, Gonen S, Gonen T, Yeates TO. PMID: 29507202; PMCID: PMC5879686.
      View in: PubMed   Mentions: 40     Fields:    Translation:Cells
    39. Putting the RuBisCO pieces together. Science. 2017 12 08; 358(6368):1253-1254. Yeates TO, Wheatley NM. PMID: 29217555.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    40. Facile methods for heterologous production of bacterial microcompartments in diverse host species. Microb Biotechnol. 2018 01; 11(1):160-162. Yeates TO, Bobik TA. PMID: 29205936; PMCID: PMC5743809.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    41. Molecular Dynamics Simulations of Selective Metabolite Transport across the Propanediol Bacterial Microcompartment Shell. J Phys Chem B. 2017 08 31; 121(34):8149-8154. Park J, Chun S, Bobik TA, Houk KN, Yeates TO. PMID: 28829618; PMCID: PMC5878063.
      View in: PubMed   Mentions: 14     Fields:    Translation:Cells
    42. Geometric Principles for Designing Highly Symmetric Self-Assembling Protein Nanomaterials. Annu Rev Biophys. 2017 05 22; 46:23-42. Yeates TO. PMID: 28301774.
      View in: PubMed   Mentions: 34     Fields:    Translation:Cells
    43. Designing and defining dynamic protein cage nanoassemblies in solution. Sci Adv. 2016 12; 2(12):e1501855. Lai YT, Hura GL, Dyer KN, Tang HY, Tainer JA, Yeates TO. PMID: 27990489; PMCID: PMC5156514.
      View in: PubMed   Mentions: 17     Fields:    
    44. The design of symmetric protein nanomaterials comes of age in theory and practice. Curr Opin Struct Biol. 2016 08; 39:134-143. Yeates TO, Liu Y, Laniado J. PMID: 27476148.
      View in: PubMed   Mentions: 26     Fields:    
    45. A PII-Like Protein Regulated by Bicarbonate: Structural and Biochemical Studies of the Carboxysome-Associated CPII Protein. J Mol Biol. 2016 10 09; 428(20):4013-4030. Wheatley NM, Eden KD, Ngo J, Rosinski JS, Sawaya MR, Cascio D, Collazo M, Hoveida H, Hubbell WL, Yeates TO. PMID: 27464895; PMCID: PMC5048545.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    46. Accurate design of megadalton-scale two-component icosahedral protein complexes. Science. 2016 Jul 22; 353(6297):389-94. Bale JB, Gonen S, Liu Y, Sheffler W, Ellis D, Thomas C, Cascio D, Yeates TO, Gonen T, King NP, Baker D. PMID: 27463675; PMCID: PMC5485857.
      View in: PubMed   Mentions: 209     Fields:    Translation:Cells
    47. The function of the PduJ microcompartment shell protein is determined by the genomic position of its encoding gene. Mol Microbiol. 2016 09; 101(5):770-83. Chowdhury C, Chun S, Sawaya MR, Yeates TO, Bobik TA. PMID: 27561553; PMCID: PMC5003431.
      View in: PubMed   Mentions: 15     Fields:    Translation:Cells
    48. Progress in low-resolution ab initio phasing with CrowdPhase. Acta Crystallogr D Struct Biol. 2016 Mar; 72(Pt 3):446-53. Jorda J, Sawaya MR, Yeates TO. PMID: 26960132; PMCID: PMC4784676.
      View in: PubMed   Mentions: 3  
    49. Responses to Crystallography and chemistry should always go together: a cautionary tale of protein complexes with cisplatin and carboplatin. Acta Crystallogr D Biol Crystallogr. 2015 Sep; 71(Pt 9):1980-1. Yeates TO. PMID: 26327387.
      View in: PubMed   Mentions: 2     Fields:    
    50. A Suite of Engineered GFP Molecules for Oligomeric Scaffolding. Structure. 2015 Sep 01; 23(9):1754-1768. Leibly DJ, Arbing MA, Pashkov I, DeVore N, Waldo GS, Terwilliger TC, Yeates TO. PMID: 26278175; PMCID: PMC4568552.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
    51. Structure of a designed tetrahedral protein assembly variant engineered to have improved soluble expression. Protein Sci. 2015 Oct; 24(10):1695-701. Bale JB, Park RU, Liu Y, Gonen S, Gonen T, Cascio D, King NP, Yeates TO, Baker D. PMID: 26174163; PMCID: PMC4594668.
      View in: PubMed   Mentions: 9     Fields:    
    52. Diffusion accessibility as a method for visualizing macromolecular surface geometry. Protein Sci. 2015 Oct; 24(10):1702-5. Tsai Y, Holton T, Yeates TO. PMID: 26189444; PMCID: PMC4594669.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    53. On the predictability of the orientation of protein domains joined by a spanning alpha-helical linker. Protein Eng Des Sel. 2015 Nov; 28(11):491-9. Lai YT, Jiang L, Chen W, Yeates TO. PMID: 26243886.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    54. Bacterial microcompartments: widespread prokaryotic organelles for isolation and optimization of metabolic pathways. Mol Microbiol. 2015 Oct; 98(2):193-207. Bobik TA, Lehman BP, Yeates TO. PMID: 26148529; PMCID: PMC4718714.
      View in: PubMed   Mentions: 64     Fields:    Translation:Cells
    55. Redesigning photosynthesis to sustainably meet global food and bioenergy demand. Proc Natl Acad Sci U S A. 2015 Jul 14; 112(28):8529-36. Ort DR, Merchant SS, Alric J, Barkan A, Blankenship RE, Bock R, Croce R, Hanson MR, Hibberd JM, Long SP, Moore TA, Moroney J, Niyogi KK, Parry MA, Peralta-Yahya PP, Prince RC, Redding KE, Spalding MH, van Wijk KJ, Vermaas WF, von Caemmerer S, Weber AP, Yeates TO, Yuan JS, Zhu XG. PMID: 26124102; PMCID: PMC4507207.
      View in: PubMed   Mentions: 282     Fields:    Translation:AnimalsCells
    56. Structures of potent anticancer compounds bound to tubulin. Protein Sci. 2015 Jul; 24(7):1164-72. McNamara DE, Senese S, Yeates TO, Torres JZ. PMID: 25970265; PMCID: PMC4500315.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimalsCells
    57. The PduL Phosphotransacylase Is Used To Recycle Coenzyme A within the Pdu Microcompartment. J Bacteriol. 2015 Jul; 197(14):2392-9. Liu Y, Jorda J, Yeates TO, Bobik TA. PMID: 25962918; PMCID: PMC4524188.
      View in: PubMed   Mentions: 20     Fields:    Translation:Cells
    58. An allosteric model for control of pore opening by substrate binding in the EutL microcompartment shell protein. Protein Sci. 2015 Jun; 24(6):956-75. Thompson MC, Cascio D, Leibly DJ, Yeates TO. PMID: 25752492; PMCID: PMC4456109.
      View in: PubMed   Mentions: 20     Fields:    Translation:Cells
    59. Selective molecular transport through the protein shell of a bacterial microcompartment organelle. Proc Natl Acad Sci U S A. 2015 Mar 10; 112(10):2990-5. Chowdhury C, Chun S, Pang A, Sawaya MR, Sinha S, Yeates TO, Bobik TA. PMID: 25713376; PMCID: PMC4364225.
      View in: PubMed   Mentions: 57     Fields:    Translation:Cells
    60. Exploring bacterial organelle interactomes: a model of the protein-protein interaction network in the Pdu microcompartment. PLoS Comput Biol. 2015 Feb; 11(2):e1004067. Jorda J, Liu Y, Bobik TA, Yeates TO. PMID: 25646976; PMCID: PMC4315436.
      View in: PubMed   Mentions: 14     Fields:    Translation:Cells
    61. Structure of a bacterial microcompartment shell protein bound to a cobalamin cofactor. Acta Crystallogr F Struct Biol Commun. 2014 Dec 01; 70(Pt 12):1584-90. Thompson MC, Crowley CS, Kopstein J, Bobik TA, Yeates TO. PMID: 25484204; PMCID: PMC4259218.
      View in: PubMed   Mentions: 14     Fields:    Translation:Cells
    62. Structure of a designed protein cage that self-assembles into a highly porous cube. Nat Chem. 2014 Dec; 6(12):1065-71. Lai YT, Reading E, Hura GL, Tsai KL, Laganowsky A, Asturias FJ, Tainer JA, Robinson CV, Yeates TO. PMID: 25411884; PMCID: PMC4239666.
      View in: PubMed   Mentions: 88     Fields:    
    63. Structure of the methanofuran/methanopterin-biosynthetic enzyme MJ1099 from Methanocaldococcus jannaschii. Acta Crystallogr F Struct Biol Commun. 2014 Nov; 70(Pt 11):1472-9. Bobik TA, Morales EJ, Shin A, Cascio D, Sawaya MR, Arbing M, Yeates TO, Rasche ME. PMID: 25372812; PMCID: PMC4231847.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    64. Diverse bacterial microcompartment organelles. Microbiol Mol Biol Rev. 2014 Sep; 78(3):438-68. Chowdhury C, Sinha S, Chun S, Yeates TO, Bobik TA. PMID: 25184561; PMCID: PMC4187681.
      View in: PubMed   Mentions: 95     Fields:    Translation:HumansAnimalsCells
    65. Identification of a unique Fe-S cluster binding site in a glycyl-radical type microcompartment shell protein. J Mol Biol. 2014 Sep 23; 426(19):3287-3304. Thompson MC, Wheatley NM, Jorda J, Sawaya MR, Gidaniyan SD, Ahmed H, Yang Z, McCarty KN, Whitelegge JP, Yeates TO. PMID: 25102080; PMCID: PMC4175982.
      View in: PubMed   Mentions: 9     Fields:    Translation:Cells
    66. Accurate design of co-assembling multi-component protein nanomaterials. Nature. 2014 Jun 05; 510(7503):103-8. King NP, Bale JB, Sheffler W, McNamara DE, Gonen S, Gonen T, Yeates TO, Baker D. PMID: 24870237; PMCID: PMC4137318.
      View in: PubMed   Mentions: 169     Fields:    
    67. CrowdPhase: crowdsourcing the phase problem. Acta Crystallogr D Biol Crystallogr. 2014 Jun; 70(Pt 6):1538-48. Jorda J, Sawaya MR, Yeates TO. PMID: 24914965; PMCID: PMC4051500.
      View in: PubMed   Mentions: 3     Fields:    
    68. Alanine scanning mutagenesis identifies an asparagine-arginine-lysine triad essential to assembly of the shell of the Pdu microcompartment. J Mol Biol. 2014 Jun 12; 426(12):2328-45. Sinha S, Cheng S, Sung YW, McNamara DE, Sawaya MR, Yeates TO, Bobik TA. PMID: 24747050; PMCID: PMC4089897.
      View in: PubMed   Mentions: 33     Fields:    Translation:Cells
    69. The role of distant mutations and allosteric regulation on LovD active site dynamics. Nat Chem Biol. 2014 Jun; 10(6):431-6. Jiménez-Osés G, Osuna S, Gao X, Sawaya MR, Gilson L, Collier SJ, Huisman GW, Yeates TO, Tang Y, Houk KN. PMID: 24727900; PMCID: PMC4028369.
      View in: PubMed   Mentions: 65     Fields:    Translation:AnimalsCells
    70. (Quasi-)racemic X-ray structures of glycosylated and non-glycosylated forms of the chemokine Ser-CCL1 prepared by total chemical synthesis. Angew Chem Int Ed Engl. 2014 May 12; 53(20):5194-8. Okamoto R, Mandal K, Sawaya MR, Kajihara Y, Yeates TO, Kent SB. PMID: 24692304.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    71. Structure of dihydromethanopterin reductase, a cubic protein cage for redox transfer. J Biol Chem. 2014 Mar 28; 289(13):8852-64. McNamara DE, Cascio D, Jorda J, Bustos C, Wang TC, Rasche ME, Yeates TO, Bobik TA. PMID: 24523405; PMCID: PMC3979419.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    72. Structure and identification of a pterin dehydratase-like protein as a ribulose-bisphosphate carboxylase/oxygenase (RuBisCO) assembly factor in the α-carboxysome. J Biol Chem. 2014 Mar 14; 289(11):7973-81. Wheatley NM, Sundberg CD, Gidaniyan SD, Cascio D, Yeates TO. PMID: 24459150; PMCID: PMC3953307.
      View in: PubMed   Mentions: 23     Fields:    Translation:Cells
    73. A challenging interpretation of a hexagonally layered protein structure. Acta Crystallogr D Biol Crystallogr. 2014 Jan; 70(Pt 1):203-8. Thompson MC, Yeates TO. PMID: 24419393; PMCID: PMC4030663.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    74. Split green fluorescent protein as a modular binding partner for protein crystallization. Acta Crystallogr D Biol Crystallogr. 2013 Dec; 69(Pt 12):2513-23. Nguyen HB, Hung LW, Yeates TO, Terwilliger TC, Waldo GS. PMID: 24311592; PMCID: PMC3852656.
      View in: PubMed   Mentions: 17     Fields:    Translation:Cells
    75. The shells of BMC-type microcompartment organelles in bacteria. J Mol Microbiol Biotechnol. 2013; 23(4-5):290-9. Yeates TO, Jorda J, Bobik TA. PMID: 23920492; PMCID: PMC5878057.
      View in: PubMed   Mentions: 30     Fields:    Translation:Cells
    76. Structure and flexibility of nanoscale protein cages designed by symmetric self-assembly. J Am Chem Soc. 2013 May 22; 135(20):7738-43. Lai YT, Tsai KL, Sawaya MR, Asturias FJ, Yeates TO. PMID: 23621606; PMCID: PMC3700533.
      View in: PubMed   Mentions: 25     Fields:    Translation:Cells
    77. Bacterial microcompartment shells of diverse functional types possess pentameric vertex proteins. Protein Sci. 2013 May; 22(5):660-5. Wheatley NM, Gidaniyan SD, Liu Y, Cascio D, Yeates TO. PMID: 23456886; PMCID: PMC3649267.
      View in: PubMed   Mentions: 43     Fields:    Translation:Cells
    78. Using comparative genomics to uncover new kinds of protein-based metabolic organelles in bacteria. Protein Sci. 2013 Feb; 22(2):179-95. Jorda J, Lopez D, Wheatley NM, Yeates TO. PMID: 23188745; PMCID: PMC3588914.
      View in: PubMed   Mentions: 62     Fields:    Translation:Cells
    79. Principles for designing ordered protein assemblies. Trends Cell Biol. 2012 Dec; 22(12):653-61. Lai YT, King NP, Yeates TO. PMID: 22975357.
      View in: PubMed   Mentions: 45     Fields:    Translation:Cells
    80. Structure of a 16-nm cage designed by using protein oligomers. Science. 2012 Jun 01; 336(6085):1129. Lai YT, Cascio D, Yeates TO. PMID: 22654051.
      View in: PubMed   Mentions: 86     Fields:    Translation:Cells
    81. Computational design of self-assembling protein nanomaterials with atomic level accuracy. Science. 2012 Jun 01; 336(6085):1171-4. King NP, Sheffler W, Sawaya MR, Vollmar BS, Sumida JP, André I, Gonen T, Yeates TO, Baker D. PMID: 22654060; PMCID: PMC4138882.
      View in: PubMed   Mentions: 221     Fields:    Translation:Cells
    82. Structure and function in complex macromolecular assemblies: some evolutionary themes. Curr Opin Struct Biol. 2012 Apr; 22(2):197-9. Jones EY, Yeates TO. PMID: 22444564.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    83. Racemic protein crystallography. Annu Rev Biophys. 2012; 41:41-61. Yeates TO, Kent SB. PMID: 22443988.
      View in: PubMed   Mentions: 46     Fields:    Translation:HumansAnimalsCells
    84. Single-wavelength phasing strategy for quasi-racemic protein crystal diffraction data. Acta Crystallogr D Biol Crystallogr. 2012 Jan; 68(Pt 1):62-8. Sawaya MR, Pentelute BL, Kent SB, Yeates TO. PMID: 22194334.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    85. Inward facing conformations of the MetNI methionine ABC transporter: Implications for the mechanism of transinhibition. Protein Sci. 2012 Jan; 21(1):84-96. Johnson E, Nguyen PT, Yeates TO, Rees DC. PMID: 22095702; PMCID: PMC3323783.
      View in: PubMed   Mentions: 22     Fields:    Translation:Cells
    86. An approach to crystallizing proteins by metal-mediated synthetic symmetrization. Protein Sci. 2011 Nov; 20(11):1876-90. Laganowsky A, Zhao M, Soriaga AB, Sawaya MR, Cascio D, Yeates TO. PMID: 21898649; PMCID: PMC3267952.
      View in: PubMed   Mentions: 31     Fields:    Translation:Cells
    87. Structural and biochemical characterization of the salicylyl-acyltranferase SsfX3 from a tetracycline biosynthetic pathway. J Biol Chem. 2011 Dec 02; 286(48):41539-41551. Pickens LB, Sawaya MR, Rasool H, Pashkov I, Yeates TO, Tang Y. PMID: 21965680; PMCID: PMC3308865.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    88. Widespread disulfide bonding in proteins from thermophilic archaea. Archaea. 2011; 2011:409156. Jorda J, Yeates TO. PMID: 21941460; PMCID: PMC3177088.
      View in: PubMed   Mentions: 21     Fields:    Translation:Cells
    89. Nanobiotechnology: protein arrays made to order. Nat Nanotechnol. 2011 Jul 31; 6(9):541-2. Yeates TO. PMID: 21804551.
      View in: PubMed   Mentions: 6     Fields:    
    90. Protein stabilization in a highly knotted protein polymer. Protein Eng Des Sel. 2011 Aug; 24(8):627-30. Sayre TC, Lee TM, King NP, Yeates TO. PMID: 21669955; PMCID: PMC3165941.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    91. The protein shells of bacterial microcompartment organelles. Curr Opin Struct Biol. 2011 Apr; 21(2):223-31. Yeates TO, Thompson MC, Bobik TA. PMID: 21315581; PMCID: PMC3070793.
      View in: PubMed   Mentions: 65     Fields:    Translation:Cells
    92. Synthetic symmetrization in the crystallization and structure determination of CelA from Thermotoga maritima. Protein Sci. 2011 Jan; 20(1):168-78. Forse GJ, Ram N, Banatao DR, Cascio D, Sawaya MR, Klock HE, Lesley SA, Yeates TO. PMID: 21082721; PMCID: PMC3047073.
      View in: PubMed   Mentions: 10     Fields:    Translation:Cells
    93. Bacterial microcompartments insights into the structure, mechanism, and engineering applications. Prog Mol Biol Transl Sci. 2011; 103:1-20. Tsai SJ, Yeates TO. PMID: 21999993.
      View in: PubMed   Mentions: 14     Fields:    Translation:Cells
    94. Structure and folding of a designed knotted protein. Proc Natl Acad Sci U S A. 2010 Nov 30; 107(48):20732-7. King NP, Jacobitz AW, Sawaya MR, Goldschmidt L, Yeates TO. PMID: 21068371; PMCID: PMC2996448.
      View in: PubMed   Mentions: 59     Fields:    Translation:Cells
    95. Determination of the X-ray structure of the snake venom protein omwaprin by total chemical synthesis and racemic protein crystallography. Protein Sci. 2010 Oct; 19(10):1840-9. Banigan JR, Mandal K, Sawaya MR, Thammavongsa V, Hendrickx AP, Schneewind O, Yeates TO, Kent SB. PMID: 20669184; PMCID: PMC2998720.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    96. Total chemical synthesis and X-ray structure of kaliotoxin by racemic protein crystallography. Chem Commun (Camb). 2010 Nov 21; 46(43):8174-6. Pentelute BL, Mandal K, Gates ZP, Sawaya MR, Yeates TO, Kent SB. PMID: 20877851.
      View in: PubMed   Mentions: 12     Fields:    Translation:Cells
    97. Structural insight into the mechanisms of transport across the Salmonella enterica Pdu microcompartment shell. J Biol Chem. 2010 Nov 26; 285(48):37838-46. Crowley CS, Cascio D, Sawaya MR, Kopstein JS, Bobik TA, Yeates TO. PMID: 20870711; PMCID: PMC2988387.
      View in: PubMed   Mentions: 67     Fields:    Translation:Cells
    98. Structure of a putative NTP pyrophosphohydrolase: YP_001813558.1 from Exiguobacterium sibiricum 255-15. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Oct 01; 66(Pt 10):1237-44. Han GW, Elsliger MA, Yeates TO, Xu Q, Murzin AG, Krishna SS, Jaroszewski L, Abdubek P, Astakhova T, Axelrod HL, Carlton D, Chen C, Chiu HJ, Clayton T, Das D, Deller MC, Duan L, Ernst D, Feuerhelm J, Grant JC, Grzechnik A, Jin KK, Johnson HA, Klock HE, Knuth MW, Kozbial P, Kumar A, Lam WW, Marciano D, McMullan D, Miller MD, Morse AT, Nigoghossian E, Okach L, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Weekes D, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA. PMID: 20944217; PMCID: PMC2954211.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    99. Short N-terminal sequences package proteins into bacterial microcompartments. Proc Natl Acad Sci U S A. 2010 Apr 20; 107(16):7509-14. Fan C, Cheng S, Liu Y, Escobar CM, Crowley CS, Jefferson RE, Yeates TO, Bobik TA. PMID: 20308536; PMCID: PMC2867708.
      View in: PubMed   Mentions: 105     Fields:    Translation:Cells
    100. Bacterial microcompartment organelles: protein shell structure and evolution. Annu Rev Biophys. 2010; 39:185-205. Yeates TO, Crowley CS, Tanaka S. PMID: 20192762; PMCID: PMC3272493.
      View in: PubMed   Mentions: 74     Fields:    Translation:Cells
    101. Structure and mechanisms of a protein-based organelle in Escherichia coli. Science. 2010 Jan 01; 327(5961):81-4. Tanaka S, Sawaya MR, Yeates TO. PMID: 20044574.
      View in: PubMed   Mentions: 87     Fields:    Translation:Cells
    102. Detecting coordinated regulation of multi-protein complexes using logic analysis of gene expression. BMC Syst Biol. 2009 Dec 14; 3:115. Sprinzak E, Cokus SJ, Yeates TO, Eisenberg D, Pellegrini M. PMID: 20003439; PMCID: PMC2804736.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    103. Two-dimensional crystals of carboxysome shell proteins recapitulate the hexagonal packing of three-dimensional crystals. Protein Sci. 2009 Dec; 18(12):2629-35. Dryden KA, Crowley CS, Tanaka S, Yeates TO, Yeager M. PMID: 19844993; PMCID: PMC2821281.
      View in: PubMed   Mentions: 28     Fields:    Translation:Cells
    104. Directed evolution and structural characterization of a simvastatin synthase. Chem Biol. 2009 Oct 30; 16(10):1064-74. Gao X, Xie X, Pashkov I, Sawaya MR, Laidman J, Zhang W, Cacho R, Yeates TO, Tang Y. PMID: 19875080; PMCID: PMC2798062.
      View in: PubMed   Mentions: 27     Fields:    Translation:Cells
    105. Analysis of lattice-translocation disorder in the layered hexagonal structure of carboxysome shell protein CsoS1C. Acta Crystallogr D Biol Crystallogr. 2009 Sep; 65(Pt 9):980-8. Tsai Y, Sawaya MR, Yeates TO. PMID: 19690376.
      View in: PubMed   Mentions: 22     Fields:    Translation:Cells
    106. Determining the DUF55-domain structure of human thymocyte nuclear protein 1 from crystals partially twinned by tetartohedry. Acta Crystallogr D Biol Crystallogr. 2009 Mar; 65(Pt 3):212-9. Yu F, Song A, Xu C, Sun L, Li J, Tang L, Yu M, Yeates TO, Hu H, He J. PMID: 19237743.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    107. Exploiting genomic patterns to discover new supramolecular protein assemblies. Protein Sci. 2009 Jan; 18(1):69-79. Beeby M, Bobik TA, Yeates TO. PMID: 19177352; PMCID: PMC2708037.
      View in: PubMed   Mentions: 14     Fields:    Translation:Cells
    108. Insights from multiple structures of the shell proteins from the beta-carboxysome. Protein Sci. 2009 Jan; 18(1):108-20. Tanaka S, Sawaya MR, Phillips M, Yeates TO. PMID: 19177356; PMCID: PMC2708042.
      View in: PubMed   Mentions: 54     Fields:    Translation:Cells
    109. Rational improvement of simvastatin synthase solubility in Escherichia coli leads to higher whole-cell biocatalytic activity. Biotechnol Bioeng. 2009 Jan 01; 102(1):20-8. Xie X, Pashkov I, Gao X, Guerrero JL, Yeates TO, Tang Y. PMID: 18988191; PMCID: PMC3928684.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    110. Generation of oxide nanopatterns by combining self-assembly of S-layer proteins and area-selective atomic layer deposition. J Am Chem Soc. 2008 Dec 17; 130(50):16908-13. Liu J, Mao Y, Lan E, Banatao DR, Forse GJ, Lu J, Blom HO, Yeates TO, Dunn B, Chang JP. PMID: 19053479.
      View in: PubMed   Mentions: 1     Fields:    
    111. Connecting actin monomers by iso-peptide bond is a toxicity mechanism of the Vibrio cholerae MARTX toxin. Proc Natl Acad Sci U S A. 2008 Nov 25; 105(47):18537-42. Kudryashov DS, Durer ZA, Ytterberg AJ, Sawaya MR, Pashkov I, Prochazkova K, Yeates TO, Loo RR, Loo JA, Satchell KJ, Reisler E. PMID: 19015515; PMCID: PMC2587553.
      View in: PubMed   Mentions: 43     Fields:    Translation:AnimalsCells
    112. Bacterial microcompartments: their properties and paradoxes. Bioessays. 2008 Nov; 30(11-12):1084-95. Cheng S, Liu Y, Crowley CS, Yeates TO, Bobik TA. PMID: 18937343; PMCID: PMC3272490.
      View in: PubMed   Mentions: 75     Fields:    Translation:Cells
    113. Equations for determining tetartohedral twin fractions. Acta Crystallogr D Biol Crystallogr. 2008 Nov; 64(Pt 11):1158-64. Yeates TO, Yu F. PMID: 19020354.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    114. Structure of the PduU shell protein from the Pdu microcompartment of Salmonella. Structure. 2008 Sep 10; 16(9):1324-32. Crowley CS, Sawaya MR, Bobik TA, Yeates TO. PMID: 18786396; PMCID: PMC5878062.
      View in: PubMed   Mentions: 46     Fields:    Translation:Cells
    115. Protein-based organelles in bacteria: carboxysomes and related microcompartments. Nat Rev Microbiol. 2008 Sep; 6(9):681-91. Yeates TO, Kerfeld CA, Heinhorst S, Cannon GC, Shively JM. PMID: 18679172.
      View in: PubMed   Mentions: 193     Fields:    Translation:Cells
    116. Structures and functional implications of an AMP-binding cystathionine beta-synthase domain protein from a hyperthermophilic archaeon. J Mol Biol. 2008 Jun 27; 380(1):181-92. King NP, Lee TM, Sawaya MR, Cascio D, Yeates TO. PMID: 18513746; PMCID: PMC2577872.
      View in: PubMed   Mentions: 10     Fields:    Translation:Cells
    117. Multiple crystal structures of actin dimers and their implications for interactions in the actin filament. Acta Crystallogr D Biol Crystallogr. 2008 Apr; 64(Pt 4):454-65. Sawaya MR, Kudryashov DS, Pashkov I, Adisetiyo H, Reisler E, Yeates TO. PMID: 18391412; PMCID: PMC2631129.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    118. Atomic-level models of the bacterial carboxysome shell. Science. 2008 Feb 22; 319(5866):1083-6. Tanaka S, Kerfeld CA, Sawaya MR, Cai F, Heinhorst S, Cannon GC, Yeates TO. PMID: 18292340.
      View in: PubMed   Mentions: 177     Fields:    Translation:Cells
    119. Biochemistry. How some pili pull. Science. 2007 Dec 07; 318(5856):1558-9. Yeates TO, Clubb RT. PMID: 18063774.
      View in: PubMed   Mentions: 12     Fields:    Translation:Cells
    120. Knotted and topologically complex proteins as models for studying folding and stability. Curr Opin Chem Biol. 2007 Dec; 11(6):595-603. Yeates TO, Norcross TS, King NP. PMID: 17967433; PMCID: PMC2179896.
      View in: PubMed   Mentions: 39     Fields:    Translation:Cells
    121. Structure of the RuBisCO chaperone RbcX from Synechocystis sp. PCC6803. Acta Crystallogr D Biol Crystallogr. 2007 Oct; 63(Pt 10):1109-12. Tanaka S, Sawaya MR, Kerfeld CA, Yeates TO. PMID: 17881829.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    122. Identification of rare slipknots in proteins and their implications for stability and folding. J Mol Biol. 2007 Oct 12; 373(1):153-66. King NP, Yeates EO, Yeates TO. PMID: 17764691.
      View in: PubMed   Mentions: 51     Fields:    Translation:Cells
    123. Structural analysis of CsoS1A and the protein shell of the Halothiobacillus neapolitanus carboxysome. PLoS Biol. 2007 Jun; 5(6):e144. Tsai Y, Sawaya MR, Cannon GC, Cai F, Williams EB, Heinhorst S, Kerfeld CA, Yeates TO. PMID: 17518518; PMCID: PMC1872035.
      View in: PubMed   Mentions: 73     Fields:    Translation:Cells
    124. Discovery of a thermophilic protein complex stabilized by topologically interlinked chains. J Mol Biol. 2007 May 18; 368(5):1332-44. Boutz DR, Cascio D, Whitelegge J, Perry LJ, Yeates TO. PMID: 17395198; PMCID: PMC1955483.
      View in: PubMed   Mentions: 34     Fields:    Translation:Cells
    125. Protein structure: evolutionary bridges to new folds. Curr Biol. 2007 Jan 23; 17(2):R48-50. Yeates TO. PMID: 17240325.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    126. Biochemistry. Proteins in a small world. Science. 2006 Dec 22; 314(5807):1882-3. Yeates TO, Beeby M. PMID: 17185587.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    127. An approach to crystallizing proteins by synthetic symmetrization. Proc Natl Acad Sci U S A. 2006 Oct 31; 103(44):16230-5. Banatao DR, Cascio D, Crowley CS, Fleissner MR, Tienson HL, Yeates TO. PMID: 17050682; PMCID: PMC1637565.
      View in: PubMed   Mentions: 41     Fields:    Translation:Cells
    128. Conformational change and assembly through edge beta strands in transthyretin and other amyloid proteins. Acc Chem Res. 2006 Sep; 39(9):576-83. Laidman J, Forse GJ, Yeates TO. PMID: 16981673.
      View in: PubMed   Mentions: 15     Fields:    Translation:Cells
    129. A framework for describing topological frustration in models of protein folding. J Mol Biol. 2006 Sep 22; 362(3):605-21. Norcross TS, Yeates TO. PMID: 16930616.
      View in: PubMed   Mentions: 14     Fields:    Translation:Cells
    130. The structure of beta-carbonic anhydrase from the carboxysomal shell reveals a distinct subclass with one active site for the price of two. J Biol Chem. 2006 Mar 17; 281(11):7546-55. Sawaya MR, Cannon GC, Heinhorst S, Tanaka S, Williams EB, Yeates TO, Kerfeld CA. PMID: 16407248.
      View in: PubMed   Mentions: 64     Fields:    Translation:Cells
    131. Utilizing logical relationships in genomic data to decipher cellular processes. FEBS J. 2005 Oct; 272(20):5110-8. Bowers PM, O'Connor BD, Cokus SJ, Sprinzak E, Yeates TO, Eisenberg D. PMID: 16218945.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimals
    132. The crystal structure of a cross-linked actin dimer suggests a detailed molecular interface in F-actin. Proc Natl Acad Sci U S A. 2005 Sep 13; 102(37):13105-10. Kudryashov DS, Sawaya MR, Adisetiyo H, Norcross T, Hegyi G, Reisler E, Yeates TO. PMID: 16141336; PMCID: PMC1196358.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    133. A computational method to predict genetically encoded rare amino acids in proteins. Genome Biol. 2005; 6(9):R79. Chaudhuri BN, Yeates TO. PMID: 16168086; PMCID: PMC1242214.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    134. The genomics of disulfide bonding and protein stabilization in thermophiles. PLoS Biol. 2005 Sep; 3(9):e309. Beeby M, O'Connor BD, Ryttersgaard C, Boutz DR, Perry LJ, Yeates TO. PMID: 16111437; PMCID: PMC1188242.
      View in: PubMed   Mentions: 80     Fields:    Translation:Cells
    135. Protein structures forming the shell of primitive bacterial organelles. Science. 2005 Aug 05; 309(5736):936-8. Kerfeld CA, Sawaya MR, Tanaka S, Nguyen CV, Phillips M, Beeby M, Yeates TO. PMID: 16081736.
      View in: PubMed   Mentions: 197     Fields:    Translation:Cells
    136. Use of logic relationships to decipher protein network organization. Science. 2004 Dec 24; 306(5705):2246-9. Bowers PM, Cokus SJ, Eisenberg D, Yeates TO. PMID: 15618515.
      View in: PubMed   Mentions: 44     Fields:    
    137. GDAP: a web tool for genome-wide protein disulfide bond prediction. Nucleic Acids Res. 2004 Jul 01; 32(Web Server issue):W360-4. O'Connor BD, Yeates TO. PMID: 15215411; PMCID: PMC441514.
      View in: PubMed   Mentions: 13     Fields:    
    138. Prolinks: a database of protein functional linkages derived from coevolution. Genome Biol. 2004; 5(5):R35. Bowers PM, Pellegrini M, Thompson MJ, Fierro J, Yeates TO, Eisenberg D. PMID: 15128449; PMCID: PMC416471.
      View in: PubMed   Mentions: 123     Fields:    Translation:Animals
    139. Crystal structure of the apo forms of psi 55 tRNA pseudouridine synthase from Mycobacterium tuberculosis: a hinge at the base of the catalytic cleft. J Biol Chem. 2004 Jun 04; 279(23):24585-91. Chaudhuri BN, Chan S, Perry LJ, Yeates TO. PMID: 15028724.
      View in: PubMed   Mentions: 15     Fields:    Translation:Cells
    140. Visualization and interpretation of protein networks in Mycobacterium tuberculosis based on hierarchical clustering of genome-wide functional linkage maps. Nucleic Acids Res. 2003 Dec 15; 31(24):7099-109. Strong M, Graeber TG, Beeby M, Pellegrini M, Thompson MJ, Yeates TO, Eisenberg D. PMID: 14654685; PMCID: PMC291866.
      View in: PubMed   Mentions: 17     Fields:    Translation:Cells
    141. Structural and EPR characterization of the soluble form of cytochrome c-550 and of the psbV2 gene product from the cyanobacterium Thermosynechococcus elongatus. Plant Cell Physiol. 2003 Jul; 44(7):697-706. Kerfeld CA, Sawaya MR, Bottin H, Tran KT, Sugiura M, Cascio D, Desbois A, Yeates TO, Kirilovsky D, Boussac A. PMID: 12881497.
      View in: PubMed   Mentions: 12     Fields:    Translation:Cells
    142. The crystal structure of the first enzyme in the pantothenate biosynthetic pathway, ketopantoate hydroxymethyltransferase, from M tuberculosis. Structure. 2003 Jul; 11(7):753-64. Chaudhuri BN, Sawaya MR, Kim CY, Waldo GS, Park MS, Terwilliger TC, Yeates TO. PMID: 12842039.
      View in: PubMed   Mentions: 16     Fields:    Translation:Cells
    143. A statistic for local intensity differences: robustness to anisotropy and pseudo-centering and utility for detecting twinning. Acta Crystallogr D Biol Crystallogr. 2003 Jul; 59(Pt 7):1124-30. Padilla JE, Yeates TO. PMID: 12832754.
      View in: PubMed   Mentions: 165     Fields:    Translation:Cells
    144. The 1.6 A resolution structure of Fe-superoxide dismutase from the thermophilic cyanobacterium Thermosynechococcus elongatus. J Biol Inorg Chem. 2003 Sep; 8(7):707-14. Kerfeld CA, Yoshida S, Tran KT, Yeates TO, Cascio D, Bottin H, Berthomieu C, Sugiura M, Boussac A. PMID: 12827458.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    145. Amyloid-like filaments and water-filled nanotubes formed by SOD1 mutant proteins linked to familial ALS. Nat Struct Biol. 2003 Jun; 10(6):461-7. Elam JS, Taylor AB, Strange R, Antonyuk S, Doucette PA, Rodriguez JA, Hasnain SS, Hayward LJ, Valentine JS, Yeates TO, Hart PJ. PMID: 12754496.
      View in: PubMed   Mentions: 125     Fields:    Translation:HumansCells
    146. Use of multiple anomalous dispersion to phase highly merohedrally twinned crystals of interleukin-1beta. Acta Crystallogr D Biol Crystallogr. 2003 Feb; 59(Pt 2):290-8. Rudolph MG, Kelker MS, Schneider TR, Yeates TO, Oseroff V, Heidary DK, Jennings PA, Wilson IA. PMID: 12554939.
      View in: PubMed   Mentions: 10     Fields:    Translation:Cells
    147. The crystal structure of a cyanobacterial water-soluble carotenoid binding protein. Structure. 2003 Jan; 11(1):55-65. Kerfeld CA, Sawaya MR, Brahmandam V, Cascio D, Ho KK, Trevithick-Sutton CC, Krogmann DW, Yeates TO. PMID: 12517340.
      View in: PubMed   Mentions: 93     Fields:    Translation:AnimalsCells
    148. Arrangement of subunits and ordering of beta-strands in an amyloid sheet. Nat Struct Biol. 2002 Oct; 9(10):734-9. Serag AA, Altenbach C, Gingery M, Hubbell WL, Yeates TO. PMID: 12219081.
      View in: PubMed   Mentions: 43     Fields:    Translation:HumansCells
    149. Designing supramolecular protein assemblies. Curr Opin Struct Biol. 2002 Aug; 12(4):464-70. Yeates TO, Padilla JE. PMID: 12163069.
      View in: PubMed   Mentions: 32     Fields:    Translation:Cells
    150. Genomic evidence that the intracellular proteins of archaeal microbes contain disulfide bonds. Proc Natl Acad Sci U S A. 2002 Jul 23; 99(15):9679-84. Mallick P, Boutz DR, Eisenberg D, Yeates TO. PMID: 12107280; PMCID: PMC124975.
      View in: PubMed   Mentions: 68     Fields:    Translation:Cells
    151. Structure of cytochrome c6 from Arthrospira maxima: an assembly of 24 subunits in a nearly symmetric shell. Acta Crystallogr D Biol Crystallogr. 2002 Jul; 58(Pt 7):1104-10. Kerfeld CA, Sawaya MR, Krogmann DW, Yeates TO. PMID: 12077429.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    152. Crystal structure of human L-isoaspartyl methyltransferase. J Biol Chem. 2002 Mar 22; 277(12):10642-6. Ryttersgaard C, Griffith SC, Sawaya MR, MacLaren DC, Clarke S, Yeates TO. PMID: 11792715.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    153. Protein repair methyltransferase from the hyperthermophilic archaeon Pyrococcus furiosus. Unusual methyl-accepting affinity for D-aspartyl and N-succinyl-containing peptides. J Biol Chem. 2002 Jan 11; 277(2):1058-65. Thapar N, Griffith SC, Yeates TO, Clarke S. PMID: 11694513.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    154. [22] Detecting and overcoming crystal twinning. Methods Enzymol. 1997; 276:344-358. Yeates TO. PMID: 27799105.
      View in: PubMed   Mentions: 2     Fields:    
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