Publications:
A selected list of publications:
McLean Jeffrey S, Liu Quanhui, Bor Batbileg, Bedree Joseph K, Cen Lujia, Watling Michael, To Thao T, Bumgarner Roger E, He Xuesong, Shi Wenyuan
Draft Genome Sequence of Actinomyces odontolyticus subsp.
actinosynbacter Strain XH001, the Basibiont of an Oral TM7 Epibiont
Genome announcements,
2016; 4(1):
.
Bor Batbileg, Poweleit Nicole, Bois Justin S, Cen Lujia, Bedree Joseph K, Zhou Z Hong, Gunsalus Robert P, Lux Renate, McLean Jeffrey S, He Xuesong, Shi Wenyuan
Phenotypic and Physiological Characterization of the Epibiotic
Interaction Between TM7x and Its Basibiont Actinomyces
Microbial ecology,
2016; 71(1):
243-55.
Edlund Anna, Yang Youngik, Yooseph Shibu, Hall Adam P, Nguyen Don D, Dorrestein Pieter C, Nelson Karen E, He Xuesong, Lux Renate, Shi Wenyuan, McLean Jeffrey S
Meta-omics uncover temporal regulation of pathways across oral
microbiome genera during in vitro sugar metabolism
The ISME journal,
2015; 9(12):
2605-19.
Lee Dong-Keun, Kim Sue Vin, Limansubroto Adelheid Nerisa, Yen Albert, Soundia Akrivoula, Wang Cun-Yu, Shi Wenyuan, Hong Christine, Tetradis Sotirios, Kim Yong, Park No-Hee, Kang Mo K, Ho Dean
Nanodiamond-Gutta Percha Composite Biomaterials for Root Canal
Therapy
ACS nano,
2015; 9(11):
11490-501.
Guo Lihong, McLean Jeffrey S, Yang Youngik, Eckert Randal, Kaplan Christopher W, Kyme Pierre, Sheikh Omid, Varnum Brian, Lux Renate, Shi Wenyuan, He Xuesong
Precision-guided antimicrobial peptide as a targeted modulator of
human microbial ecology
Proceedings of the National Academy of Sciences of the United States of America,
2015; 112(24):
7569-74.
Xu Xin, He Jinzhi, Xue Jing, Wang Yan, Li Kun, Zhang Keke, Guo Qiang, Liu Xianghong, Zhou Yuan, Cheng Lei, Li Mingyun, Li Yuqing, Li Yan, Shi Wenyuan, Zhou Xuedong
Oral cavity contains distinct niches with dynamic microbial
communities
Environmental microbiology,
2015; 17(3):
699-710.
He Xuesong, McLean Jeffrey S, Edlund Anna, Yooseph Shibu, Hall Adam P, Liu Su-Yang, Dorrestein Pieter C, Esquenazi Eduardo, Hunter Ryan C, Cheng Genhong, Nelson Karen E, Lux Renate, Shi Wenyuan
Cultivation of a human-associated TM7 phylotype reveals a reduced
genome and epibiotic parasitic lifestyle
Proceedings of the National Academy of Sciences of the United States of America,
2015; 112(1):
244-9.
Li Yan, He Jinzhi, He Zhili, Zhou Yuan, Yuan Mengting, Xu Xin, Sun Feifei, Liu Chengcheng, Li Jiyao, Xie Wenbo, Deng Ye, Qin Yujia, VanNostrand Joy D, Xiao Liying, Wu Liyou, Zhou Jizhong, Shi Wenyuan, Zhou Xuedong
Phylogenetic and functional gene structure shifts of the oral
microbiomes in periodontitis patients
The ISME journal,
2014; 8(9):
1879-91.
Le Shuai, Yao Xinyue, Lu Shuguang, Tan Yinling, Rao Xiancai, Li Ming, Jin Xiaolin, Wang Jing, Zhao Yan, Wu Nicholas C, Lux Renate, He Xuesong, Shi Wenyuan, Hu Fuquan
Chromosomal DNA deletion confers phage resistance to Pseudomonas
aeruginosa
Scientific reports,
2014; 4(Pt 7):
4738.
Tu Qichao, He Zhili, Li Yan, Chen Yanfei, Deng Ye, Lin Lu, Hemme Christopher L, Yuan Tong, Van Nostrand Joy D, Wu Liyou, Zhou Xuedong, Shi Wenyuan, Li Lanjuan, Xu Jian, Zhou Jizhong
Development of HuMiChip for functional profiling of human microbiomes
PloS one,
2014; 9(3):
e90546.
Wang Yan, Xue Jing, Zhou Xuedong, You Meng, Du Qin, Yang Xue, He Jinzhi, He Jingzhi, Zou Jing, Cheng Lei, Li Mingyun, Li Yuqing, Zhu Yiping, Li Jiyao, Shi Wenyuan, Xu Xin
Oral microbiota distinguishes acute lymphoblastic leukemia pediatric
hosts from healthy populations
PloS one,
2014; 9(7):
e102116.
Wu Tingxi, Hu Wei, Guo Lihong, Finnegan Marybeth, Bradshaw David J, Webster Paul, Loewy Zvi G, Zhou Xuedong, Shi Wenyuan, Lux Renate
Development of a new model system to study microbial colonization on
dentures
Journal of prosthodontics : official journal of the American College of Prosthodontists,
2013; 22(5):
344-50.
Edlund Anna, Yang Youngik, Hall Adam P, Guo Lihong, Lux Renate, He Xuesong, Nelson Karen E, Nealson Kenneth H, Yooseph Shibu, Shi Wenyuan, McLean Jeffrey S
An in vitro biofilm model system maintaining a highly reproducible
species and metabolic diversity approaching that of the human oral
microbiome
Microbiome,
2013; 1(1):
25.
Zhang Guishan, Zhang Fan, Ding Gang, Li Jie, Guo Xiaopeng, Zhu Jinxing, Zhou Liguang, Cai Shichun, Liu Xiaoli, Luo Yuanming, Zhang Guifeng, Shi Wenyuan, Dong Xiuzhu
Acyl homoserine lactone-based quorum sensing in a methanogenic
archaeon
The ISME journal,
2012; 6(7):
1336-44.
Hu Wei, Wang Jing, McHardy Ian, Lux Renate, Yang Zhe, Li Yuezhong, Shi Wenyuan
Effects of exopolysaccharide production on liquid vegetative growth,
stress survival, and stationary phase recovery in Myxococcus xanthus
Journal of microbiology (Seoul, Korea),
2012; 50(2):
241-8.
Hu Wei, Li Lina, Sharma Shivani, Wang Jing, McHardy Ian, Lux Renate, Yang Zhe, He Xuesong, Gimzewski James K, Li Yuezhong, Shi Wenyuan
DNA builds and strengthens the extracellular matrix in Myxococcus
xanthus biofilms by interacting with exopolysaccharides
PloS one,
2012; 7(12):
e51905.
Hung David C I, Downey Jennifer S, Ayala Eduardo A, Kreth Jens, Mair Richard, Senadheera Dilani B, Qi Fengxia, Cvitkovitch Dennis G, Shi Wenyuan, Goodman Steven D
Characterization of DNA binding sites of the ComE response regulator
from Streptococcus mutans
Journal of bacteriology,
2011; 193(14):
3642-52.
Yarbrough Daniel K, Hagerman Elizabeth, Eckert Randal, He Jian, Choi Hyewon, Cao Nga, Le Karen, Hedger Jennifer, Qi Fengxia, Anderson Maxwell, Rutherford Bruce, Wu Ben, Tetradis Sotiris, Shi Wenyuan
Specific binding and mineralization of calcified surfaces by small
peptides
Calcified tissue international,
2010; 86(1):
58-66.
Wang Qiuwei, Zheng Jun-Ying, Kreth Jens, Yan Xinmin, Kamata Masakazu, Campbell Richard A, Xie Yiming, Chiu Robert, Berenson James R, Shi Wenyuan, Chen Irvin S Y, Pang Shen
Regulation of prostate-specific antigen expression by the junctional
adhesion molecule A
Urology,
2009; 73(5):
1119-25.
Sondej Melissa, Denny Patricia A, Xie Yongming, Ramachandran Prasanna, Si Yan, Takashima Jona, Shi Wenyuan, Wong David T, Loo Joseph A, Denny Paul C
Glycoprofiling of the Human Salivary Proteome
Clinical proteomics,
2009; 5(1):
52-68.
Kreth Jens, Hung David C I, Merritt Justin, Perry Julie, Zhu Lin, Goodman Steven D, Cvitkovitch Dennis G, Shi Wenyuan, Qi Fengxia
The response regulator ComE in Streptococcus mutans functions both as
a transcription activator of mutacin production and repressor of CSP
biosynthesis
Microbiology (Reading, England),
2007; 153(Pt 6):
1799-807.
Gu F, Lux R, Du-Thumm L, Stokes I, Kreth J, Anderson MH, Wong DT, Wolinsky L, Sullivan R, Shi W
In situ and non-invasive detection of specific bacterial species in oral biofilms using fluorescently labeled monoclonal antibodies
Journal of microbiological methods. ,
2005; 62(2):
145-60.
Lancero H, Caberoy NB, Castaneda S, Li Y, Lu A, Dutton D, Duan XY, Kaplan HB, Shi W, Garza AG
Characterization of a Myxococcus xanthus mutant that is defective for adventurous motility and social motility
Microbiology (Reading, England) ,
2004; 150(Pt 12):
4085-93.
Kreth J, Hagerman E, Tam K, Merritt J, Wong DT, Wu BM, Myung NV, Shi W, Qi F
Quantitative analyses of Streptococcus mutans biofilms with quartz crystal microbalance, microjet impingement and confocal microscopy
Biofilms,
2004; 1(4):
277-284.
St John MA, Li Y, Zhou X, Denny P, Ho CM, Montemagno C, Shi W, Qi F, Wu B, Sinha U, Jordan R, Wolinsky L, Park NH, Liu H, Abemayor E, Wong DT
Interleukin 6 and interleukin 8 as potential biomarkers for oral cavity and oropharyngeal squamous cell carcinoma
Archives of otolaryngology--head & neck surgery. ,
2004; 130(8):
929-35.
Lux R, Shi W
Chemotaxis-guided movements in bacteria
Critical reviews in oral biology and medicine : an official publication of the American Association of Oral Biologists. ,
2004; 15(4):
207-20.
Lux R, Li Y, Lu A and Shi W
Detailed analysis of structural features of Myxococcus xanthus fruiting bodies using confocal laser scanning microscopy,
Biofilms,
2004; 1:
293-303.